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Chromatin Loops in the Chaotic Genome Revealed by a Computational Lens
12024-02-06T21:30:29+00:00Julia Teran9aca9c408841ff28b321d7128a1e5c918a151e1d601The billions of letters of DNA in each of your cells are the unique set of instructions for the processes of life. But only ~1% of them are genes. The rest of the instructions (ignoring some evolutionary junk) decide when to turn specific genes on and off. It is these noncoding regions which contain nearly all DNA mutations that are linked to diseases. DNA mutations millions of bases away from a gene can cause that gene to turn on or off at the wrong time leading to disease. This is because DNA does not exist as a single long string of letters, but as a complex 3-dimensional spaghetti of DNA interactions, called loops. The 3D structure formed by these loops is different across all the different types of cells in your body, and it determines which genes a certain cell is going to turn on or off. But a mutation near a loop can disrupt this function or prevent the loop from forming. Measuring these loops is difficult and costly but has the potential to accelerate research into development and genetic diseases. We have developed a machine learning tool which can pinpoint these interactions at a fraction of the cost.2024-02-06T21:30:29+00:0025Dylan PlummerCase Western Reserve UniversityJulia Teran9aca9c408841ff28b321d7128a1e5c918a151e1d
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12024-02-02T20:22:30+00:00Daniela Solomone316041929e7cb3504341dbd1e9eb2f7bd821a142024 Case Western Reserve University SubmissionsDaniela Solomon7structured_gallery2024-03-19T17:58:24+00:00Daniela Solomone316041929e7cb3504341dbd1e9eb2f7bd821a14
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12024-02-06T15:12:10+00:00Daniela Solomone316041929e7cb3504341dbd1e9eb2f7bd821a14Case Western Reserve UniversityDaniela Solomon6gallery2024-03-19T15:38:38+00:00Daniela Solomone316041929e7cb3504341dbd1e9eb2f7bd821a14